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org.Hs.eg.db

This is the development version of org.Hs.eg.db; for the stable release version, see org.Hs.eg.db.

Genome wide annotation for Human

Bioconductor version: Development (3.18)

Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.

Author: Marc Carlson

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("org.Hs.eg.db")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("org.Hs.eg.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Homo_sapiens, OrgDb, humanLLMappings
Version 3.17.0
License Artistic-2.0
Depends R (>= 2.7.0), methods, AnnotationDbi(>= 1.61.0)
Imports
Linking To
Suggests DBI, annotate, RUnit
System Requirements
Enhances
URL
See More
Depends On Me annotation, clariomdhumanprobeset.db, clariomdhumantranscriptcluster.db, clariomshumanhttranscriptcluster.db, clariomshumantranscriptcluster.db, CoCiteStats, FDb.InfiniumMethylation.hg18, FDb.InfiniumMethylation.hg19, GGHumanMethCancerPanelv1.db, GSReg, h10kcod.db, h20kcod.db, hcg110.db, hgfocus.db, hgu133a.db, hgu133a2.db, hgu133b.db, hgu133plus2.db, hgu219.db, hgu95a.db, hgu95av2.db, hgu95b.db, hgu95c.db, hgu95d.db, hgu95e.db, hguatlas13k.db, hgubeta7.db, hguDKFZ31.db, hgug4100a.db, hgug4101a.db, hgug4110b.db, hgug4111a.db, hgug4112a.db, hgug4845a.db, hguqiagenv3.db, hi16cod.db, Homo.sapiens, hs25kresogen.db, Hs6UG171.db, HsAgilentDesign026652.db, hta20probeset.db, hta20transcriptcluster.db, hthgu133a.db, hthgu133b.db, hthgu133plusa.db, hthgu133plusb.db, hthgu133pluspm.db, hu35ksuba.db, hu35ksubb.db, hu35ksubc.db, hu35ksubd.db, hu6800.db, huex10stprobeset.db, huex10sttranscriptcluster.db, hugene10stprobeset.db, hugene10sttranscriptcluster.db, hugene11stprobeset.db, hugene11sttranscriptcluster.db, hugene20stprobeset.db, hugene20sttranscriptcluster.db, hugene21stprobeset.db, hugene21sttranscriptcluster.db, HuO22.db, hwgcod.db, IlluminaHumanMethylation27k.db, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv2BeadID.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, JazaeriMetaData.db, KEGGlincs, LAPOINTE.db, lumiHumanAll.db, Norway981.db, nugohs1a520180.db, OperonHumanV3.db, PartheenMetaData.db, pedbarrayv10.db, pedbarrayv9.db, POCRCannotation.db, rnaseqGene, Roberts2005Annotation.db, SHDZ.db, signatureSearch, tRanslatome, u133x3p.db, variants
Imports Me APL, artMS, attract, bioCancer, BioNAR, CBNplot, cellity, chimeraviz, chipenrich, consensusDE, consICA, CoSIA, dce, debrowser, EasyCellType, eegc, EGSEA, famat, GDCRNATools, geneAttribution, GenomicState, GmicR, GOpro, GOSim, goSorensen, IRISFGM, mastR, MCbiclust, MetaboSignal, methylGSA, mirIntegrator, miRLAB, miRSM, miRspongeR, missMethyl, msigdb, mslp, nanotatoR, netZooR, OutSplice, PanomiR, pathview, profileplyr, rCGH, recountWorkflow, REMP, rGREAT, rgsepd, RNAAgeCalc, rTRMui, scPipe, SGCP, signifinder, simplifyEnrichment, SingscoreAMLMutations, SMITE, SpidermiR, sSNAPPY, SubCellBarCode, SVMDO, TFEA.ChIP, TFutils, trena, UMI4Cats, uncoverappLib
Suggests Me AllelicImbalance, annotate, AnnotationDbi, AnnotationFilter, AnnotationForge, annotatr, appreci8R, ASURAT, autonomics, BiocOncoTK, BioCor, BiocSet, BioQC, BloodCancerMultiOmics2017, borealis, bumphunter, categoryCompare, CeTF, chipenrich.data, ChIPpeakAnno, ChIPseeker, CINdex, clusterProfiler, cnvGSA, CNVRanger, CRISPRseek, crossmeta, derfinderPlot, dmrseq, DOSE, edgeR, EnhancedVolcano, enhancerHomologSearch, enrichplot, EpiCompare, EpiMix, esATAC, ExpHunterSuite, FELLA, fishpond, FRASER, GA4GHclient, GA4GHshiny, gage, gCrisprTools, GeneNetworkBuilder, GeneTonic, geneXtendeR, GenomicFeatures, GenomicInteractionNodes, GeoTcgaData, globaltest, gmapR, goProfiles, GOSemSim, goseq, GOstats, GRaNIE, graphite, groHMM, GSAR, GSEABase, GSVA, GUIDEseq, gwascat, hpar, HTSeqGenie, ideal, iNETgrate, InteractiveComplexHeatmap, InterMineR, iSEEu, karyoploteR, KEGGgraph, limma, MesKit, miRNAtap, MLP, mogsa, multiGSEA, NanoMethViz, NetActivity, NetSAM, NoRCE, ontoProc, oppar, Organism.dplyr, OUTRIDER, pageRank, paxtoolsr, pcaExplorer, PCAtools, pcxn, PFP, Pigengene, plotgardener, prostateCancerTaylor, ProteoDisco, PureCN, quantiseqr, R3CPET, ramr, ReactomePA, recount, restfulSE, RforProteomics, RLSeq, RnBeads, rrvgo, RTopper, rtracklayer, rTRM, scde, scFeatures, scGPS, scmeth, SigFuge, SOMNiBUS, spatialHeatmap, TCGAutils, tenXplore, tidybulk, TimiRGeN, trackViewer, tricycle, Ularcirc, VariantFiltering, vissE, wiggleplotr
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package org.Hs.eg.db_3.17.0.tar.gz
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macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/org.Hs.eg.db/
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