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CNORfeeder

This is the development version of CNORfeeder; for the stable release version, see CNORfeeder.

Integration of CellNOptR to add missing links

Bioconductor version: Development (3.18)

This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.

Author: Federica Eduati [aut], Enio Gjerga [ctb], Attila Gabor [cre]

Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>

Citation (from within R, enter citation("CNORfeeder")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CNORfeeder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfeeder")
Main vignette:Playing with networks using CNORfeeder PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, CellBiology, NetworkInference, Proteomics, Software
Version 1.41.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 3.6.0), CellNOptR(>= 1.4.0), graph
Imports
Linking To
Suggests minet, Rgraphviz, RUnit, BiocGenerics, igraph
System Requirements
Enhances MEIGOR
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNORfeeder_1.41.0.tar.gz
Windows Binary CNORfeeder_1.41.0.zip
macOS Binary (x86_64) CNORfeeder_1.41.0.tgz
macOS Binary (arm64) CNORfeeder_1.41.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNORfeeder
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNORfeeder
Bioc Package Browser https://code.bioconductor.org/browse/CNORfeeder/
Package Short Url https://bioconductor.org/packages/CNORfeeder/
Package Downloads Report Download Stats