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CONFESS

This is the development version of CONFESS; for the stable release version, see CONFESS.

Cell OrderiNg by FluorEScence Signal

Bioconductor version: Development (3.18)

Single Cell Fluidigm Spot Detector.

Author: Diana LOW and Efthimios MOTAKIS

Maintainer: Diana LOW <lowdiana at gmail.com>

Citation (from within R, enter citation("CONFESS")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CONFESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CONFESS")
CONFESS PDF R Script
CONFESS Walkthrough HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBiology, Classification, Clustering, DataImport, GeneExpression, ImmunoOncology, QualityControl, RNASeq, Regression, Software, TimeCourse, Visualization
Version 1.29.0
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License GPL-2
Depends R (>= 3.3), grDevices, utils, stats, graphics
Imports methods, changepoint, cluster, contrast, data.table (>= 1.9.7), ecp, EBImage, flexmix, flowCore, flowClust, flowMeans, flowMerge, flowPeaks, foreach, ggplot2, grid, limma, MASS, moments, outliers, parallel, plotrix, raster, readbitmap, reshape2, SamSPECTRAL, waveslim, wavethresh, zoo
Linking To
Suggests BiocStyle, knitr, rmarkdown, CONFESSdata
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Enhances
URL
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Depends On Me
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CONFESS_1.29.0.tar.gz
Windows Binary CONFESS_1.29.0.zip
macOS Binary (x86_64) CONFESS_1.29.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CONFESS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CONFESS
Bioc Package Browser https://code.bioconductor.org/browse/CONFESS/
Package Short Url https://bioconductor.org/packages/CONFESS/
Package Downloads Report Download Stats