CSSP

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of CSSP; for the stable release version, see CSSP.

ChIP-Seq Statistical Power

Bioconductor version: Development (3.18)

Power computation for ChIP-Seq data based on Bayesian estimation for local poisson counting process.

Author: Chandler Zuo, Sunduz Keles

Maintainer: Chandler Zuo<zuo at stat.wisc.edu>

Citation (from within R, enter citation("CSSP")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CSSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Details

biocViews	Bayesian, ChIPSeq, QualityControl, Sequencing, Software
Version	1.39.1
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	GPL-2
Depends
Imports	methods, splines, stats, utils
Linking To
Suggests	testthat
System Requirements
Enhances
URL

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CSSP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CSSP
Package Short Url	https://bioconductor.org/packages/CSSP/
Package Downloads Report	Download Stats