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CTdata

This is the development version of CTdata; for the stable release version, see CTdata.

Data companion to CTexploreR

Bioconductor version: Development (3.18)

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

Author: Axelle Loriot [aut] , Julie Devis [aut] , Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("CTdata")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CTdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics
Version 1.1.4
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2)
Imports ExperimentHub, utils
Linking To
Suggests testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment
System Requirements
Enhances
URL
Bug Reports https://github.com/UCLouvain-CBIO/CTdata/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary CTdata_1.1.4.zip
macOS Binary (x86_64) CTdata_1.1.4.tgz
macOS Binary (arm64) CTdata_1.1.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/CTdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTdata
Bioc Package Browser https://code.bioconductor.org/browse/CTdata/
Package Short Url https://bioconductor.org/packages/CTdata/
Package Downloads Report Download Stats