| Depends On Me |
AffiXcan, airway, alabaster.se, AllelicImbalance, atena, bambu, BDMMAcorrect, benchmarkfdrData2019, BiocSklearn, BioPlex, BiSeq, bnbc, bodymapRat, bsseq, CAGEfightR, celaref, celldex, clusterExperiment, compartmap, CoreGx, coseq, csaw, CSSQ, curatedAdipoChIP, curatedAdipoRNA, curatedMetagenomicData, DaMiRseq, deco, deepSNV, DeMixT, DESeq2, DEXSeq, DiffBind, diffcoexp, diffHic, divergence, DMCFB, DMCHMM, ENmix, EnrichmentBrowser, epigenomix, evaluomeR, EventPointer, exomePeak2, ExperimentSubset, ExpressionAtlas, extraChIPs, FEAST, fission, FRASER, GenomicAlignments, GenomicFiles, GenomicSuperSignature, GRmetrics, GSEABenchmarkeR, HDCytoData, HelloRanges, hermes, HiCDOC, HighlyReplicatedRNASeq, hipathia, HMP16SData, InTAD, InteractionSet, IntEREst, iSEE, iSEEhex, iSEEhub, iSEEindex, ISLET, isomiRs, ivygapSE, lefser, lipidr, LoomExperiment, Macarron, made4, MatrixQCvis, MBASED, MetaGxOvarian, MetaGxPancreas, methrix, methylPipe, MethylSeqData, MetNet, mia, miaViz, MicrobiomeBenchmarkData, microbiomeDataSets, microRNAome, MICSQTL, minfi, miRmine, moanin, MouseGastrulationData, MouseThymusAgeing, mpra, MultiAssayExperiment, NADfinder, NBAMSeq, NewWave, ObMiTi, orthos, OUTRIDER, padma, parathyroidSE, PDATK, phenomis, PhIPData, profileplyr, qmtools, qsvaR, recount, recount3, RegEnrich, REMP, restfulSE, restfulSEData, ROCpAI, rqt, runibic, sampleClassifierData, Scale4C, scAnnotatR, scGPS, scMultiome, scone, screenCounter, scTreeViz, SDAMS, sechm, SeqGate, SEtools, SGSeq, signatureSearch, SingleCellExperiment, singleCellTK, SingleR, soGGi, spatialDmelxsim, spqn, spqnData, sRACIPE, ssPATHS, stageR, SummarizedBenchmark, survtype, TENxIO, tidySummarizedExperiment, timecoursedata, TissueEnrich, TNBC.CMS, TREG, tuberculosis, UMI4Cats, VanillaICE, VariantAnnotation, VariantExperiment, velociraptor, weitrix, yamss, zinbwave |
| Imports Me |
ADAM, ADImpute, aggregateBioVar, airpart, alabaster.spatial, ALDEx2, ANCOMBC, animalcules, anota2seq, APAlyzer, apeglm, APL, appreci8R, ASICS, ASURAT, ATACseqTFEA, AUCell, autonomics, awst, barcodetrackR, BASiCS, BASiCStan, batchelor, BayesSpace, bayNorm, BBCAnalyzer, beer, benchdamic, bigPint, BiocOncoTK, BioNERO, biosigner, biotmle, biovizBase, biscuiteer, BiSeq, blacksheepr, BloodCancerMultiOmics2017, BloodGen3Module, brgedata, BRGenomics, BUMHMM, BUScorrect, BUSseq, CaDrA, CAEN, CAGEr, CATALYST, CBEA, cBioPortalData, ccfindR, CDI, celda, CelliD, CellMixS, CellScore, CellTrails, censcyt, Cepo, CeTF, CHETAH, ChIPpeakAnno, ChromSCape, chromVAR, CiteFuse, CLLmethylation, clustifyr, cmapR, CNVfilteR, CNVRanger, CoGAPS, comapr, combi, condiments, consensusDE, consICA, CopyNumberPlots, corral, COSMIC.67, countsimQC, CTSV, CuratedAtlasQueryR, curatedTCGAData, cydar, CyTOFpower, cytofQC, cytoKernel, cytomapper, cytoviewer, DAMEfinder, debCAM, debrowser, decompTumor2Sig, DEFormats, DEGreport, DELocal, deltaCaptureC, demuxSNP, DEP, DEScan2, DESpace, destiny, DEWSeq, diffcyt, DifferentialRegulation, diffUTR, Dino, DiscoRhythm, distinct, dittoSeq, DMRcate, DominoEffect, doppelgangR, doseR, DropletUtils, Dune, easierData, easyRNASeq, eisaR, ELMER, emtdata, ensemblVEP, epialleleR, epigraHMM, EpiMix, epimutacions, epistack, epivizrData, erma, escape, escheR, EWCE, ExpHunterSuite, FCBF, fcScan, FeatSeekR, FieldEffectCrc, FindIT2, fishpond, FLAMES, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, fluentGenomics, FuseSOM, GARS, gCrisprTools, gDRcore, gDRutils, gemma.R, GeneTonic, genomicInstability, GeoTcgaData, getDEE2, ggbio, ggspavis, Glimma, glmGamPoi, glmSparseNet, GNET2, GRaNIE, GreyListChIP, gscreend, GSE13015, GSVA, gwasurvivr, GWENA, HiBED, HiContacts, HMP2Data, HTSeqGenie, HumanTranscriptomeCompendium, hummingbird, iasva, icetea, ideal, IFAA, IgGeneUsage, IHWpaper, ILoReg, imcRtools, iNETgrate, infercnv, INSPEcT, InterMineR, IntOMICS, iSEEu, IsoformSwitchAnalyzeR, LACE, LineagePulse, lineagespot, lionessR, lisaClust, MADSEQ, MAI, mariner, marr, MAST, mastR, mbkmeans, MBQN, mCSEA, MEAL, MEAT, MEB, MerfishData, MetaboAnnotation, metabolomicsWorkbenchR, MetaGxBreast, MetaNeighbor, MetaScope, metaseqR2, MethReg, MethylAid, methylscaper, methylumi, miaSim, MicrobiotaProcess, midasHLA, miloR, MinimumDistance, miRLAB, miRSM, missMethyl, MLInterfaces, MLSeq, monaLisa, MoonlightR, motifbreakR, motifmatchr, MPRAnalyze, MsExperiment, MsFeatures, msgbsR, MSPrep, msqrob2, MuData, MultiDataSet, multiOmicsViz, multiWGCNA, mumosa, muscat, musicatk, MWASTools, NanoMethViz, Nebulosa, NetActivity, netSmooth, nnSVG, NoRCE, NormalyzerDE, oligoClasses, omicRexposome, OmicsLonDA, omicsPrint, omicsViewer, oncomix, ontoProc, ORFik, orthosData, OVESEG, PAIRADISE, pairedGSEA, pairkat, pcaExplorer, peco, PharmacoGx, phemd, phenopath, PhosR, pipeComp, planttfhunter, pmp, POMA, POWSC, proActiv, proDA, psichomics, PureCN, QFeatures, qsmooth, quantiseqr, R453Plus1Toolbox, RadioGx, RaggedExperiment, RareVariantVis, RcisTarget, receptLoss, regionReport, regsplice, rgsepd, rifi, rifiComparative, Rmmquant, RNAAgeCalc, RNAsense, RnaSeqSampleSize, roar, RolDE, ropls, rScudo, RTCGAToolbox, RTN, satuRn, SBGNview, SC3, SCArray, SCArray.sat, scater, scBFA, scCB2, scDblFinder, scDD, scDDboost, scds, scFeatures, scHOT, scmap, scMerge, scMET, scmeth, SCnorm, scoreInvHap, scp, scPipe, scran, scReClassify, scRepertoire, scRNAseq, scruff, scry, scTensor, scTGIF, scuttle, scviR, segmenter, seqCAT, sesame, SGCP, sigFeature, signifinder, SigsPack, SimBu, simpleSeg, SingleCellMultiModal, singscore, SingscoreAMLMutations, slalom, slingshot, snapcount, SNPhood, Spaniel, spaSim, SpatialCPie, spatialDE, SpatialExperiment, SpatialFeatureExperiment, spatialHeatmap, spatialLIBD, spatzie, SPIAT, spicyR, splatter, SpliceWiz, SplicingFactory, SpotClean, srnadiff, sSNAPPY, standR, Statial, stJoincount, struct, StructuralVariantAnnotation, supersigs, SVMDO, switchde, systemPipeR, systemPipeTools, TabulaMurisSenisData, TBSignatureProfiler, TCGAbiolinks, TCGAutils, TCGAWorkflow, TCGAWorkflowData, TCseq, TEKRABber, tenXplore, tidybulk, tidySingleCellExperiment, TOAST, tomoda, ToxicoGx, tradeSeq, TrajectoryUtils, transformGamPoi, traviz, TreeSummarizedExperiment, Trendy, tricycle, TSCAN, TTMap, TVTB, tximeta, UCell, VAExprs, VariantFiltering, VDJdive, vidger, Voyager, wpm, xcms, zellkonverter, zFPKM |
