ComplexHeatmap
This is the development version of ComplexHeatmap; for the stable release version, see ComplexHeatmap.
Make Complex Heatmaps
Bioconductor version: Development (3.18)
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
Author: Zuguang Gu [aut, cre] 
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("ComplexHeatmap")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ComplexHeatmap")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ComplexHeatmap")| complex_heatmap.html | HTML | |
| Most probably asked questions | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 2.17.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (8.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.0), methods, grid, graphics, stats, grDevices |
| Imports | circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools |
| Linking To | |
| Suggests | testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick |
| System Requirements | |
| Enhances | |
| URL | https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/ |
See More
| Depends On Me | AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, recoup, sechm |
| Imports Me | airpart, ASURAT, BindingSiteFinder, BiocOncoTK, BioNERO, blacksheepr, BloodGen3Module, CATALYST, celda, CeTF, COCOA, cola, COTAN, cytoKernel, DEGreport, DEP, diffcyt, diffUTR, ELMER, fCCAC, FLAMES, gCrisprTools, GeneTonic, GenomicSuperSignature, gmoviz, GRaNIE, hermes, InterCellar, iSEE, LineagePulse, MatrixQCvis, MesKit, microbiomeMarker, MOMA, monaLisa, muscat, musicatk, MWASTools, PathoStat, PeacoQC, pipeComp, POMA, profileplyr, RLSeq, scRNAseqApp, segmenter, signifinder, simplifyEnrichment, singleCellTK, sparrow, SPONGE, TBSignatureProfiler, TCGAWorkflow, Xeva |
| Suggests Me | artMS, bambu, clustifyr, CNVRanger, demuxSNP, dittoSeq, EnrichmentBrowser, gtrellis, HilbertCurve, mastR, msImpute, NanoporeRNASeq, pareg, plotgardener, projectR, proteasy, QFeatures, scDblFinder, SPIAT, TCGAbiolinks, TCGAutils, weitrix |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ComplexHeatmap_2.17.0.tar.gz |
| Windows Binary | ComplexHeatmap_2.17.0.zip |
| macOS Binary (x86_64) | ComplexHeatmap_2.17.0.tgz |
| macOS Binary (arm64) | ComplexHeatmap_2.17.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ComplexHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ComplexHeatmap |
| Bioc Package Browser | https://code.bioconductor.org/browse/ComplexHeatmap/ |
| Package Short Url | https://bioconductor.org/packages/ComplexHeatmap/ |
| Package Downloads Report | Download Stats |