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gtrellis

This is the development version of gtrellis; for the stable release version, see gtrellis.

Genome Level Trellis Layout

Bioconductor version: Development (3.18)

Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("gtrellis")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gtrellis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gtrellis")
Make Genome-level Trellis Graph HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Sequencing, Software, Visualization
Version 1.33.0
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), grid, IRanges, GenomicRanges
Imports circlize (>= 0.4.8), GetoptLong, grDevices, utils
Linking To
Suggests testthat (>= 1.0.0), knitr, RColorBrewer, markdown, rmarkdown, ComplexHeatmap(>= 1.99.0), Cairo, png, jpeg, tiff
System Requirements
Enhances
URL https://github.com/jokergoo/gtrellis
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gtrellis_1.33.0.tar.gz
Windows Binary gtrellis_1.33.0.zip
macOS Binary (x86_64) gtrellis_1.33.0.tgz
macOS Binary (arm64) gtrellis_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gtrellis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gtrellis
Bioc Package Browser https://code.bioconductor.org/browse/gtrellis/
Package Short Url https://bioconductor.org/packages/gtrellis/
Package Downloads Report Download Stats