This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

DEFormats

This is the development version of DEFormats; for the stable release version, see DEFormats.

Differential gene expression data formats converter

Bioconductor version: Development (3.18)

Convert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("DEFormats")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DEFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEFormats")
Differential gene expression data formats converter HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version 1.29.0
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License GPL-3
Depends
Imports checkmate, data.table, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment
Linking To
Suggests BiocStyle(>= 1.8.0), knitr, rmarkdown, testthat
System Requirements
Enhances
URL https://github.com/aoles/DEFormats
Bug Reports https://github.com/aoles/DEFormats/issues
See More
Depends On Me
Imports Me regionReport
Suggests Me ideal
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DEFormats_1.29.0.tar.gz
Windows Binary DEFormats_1.29.0.zip (64-bit only)
macOS Binary (x86_64) DEFormats_1.29.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/DEFormats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DEFormats
Bioc Package Browser https://code.bioconductor.org/browse/DEFormats/
Package Short Url https://bioconductor.org/packages/DEFormats/
Package Downloads Report Download Stats