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DExMA

This is the development version of DExMA; for the stable release version, see DExMA.

Differential Expression Meta-Analysis

Bioconductor version: Development (3.18)

performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.

Author: Juan Antonio Villatoro-García [aut, cre], Pedro Carmona-Sáez [aut]

Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>

Citation (from within R, enter citation("DExMA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DExMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DExMA")
Differential Expression Meta-Analysis with DExMA package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, QualityControl, Software, StatisticalMethod
Version 1.9.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License GPL-2
Depends R (>= 4.1), DExMAdata
Imports Biobase, GEOquery, impute, limma, pheatmap, plyr, scales, snpStats, sva, swamp, stats, methods, utils, bnstruct, RColorBrewer, grDevices
Linking To
Suggests BiocStyle, qpdf, BiocGenerics, RUnit
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DExMA_1.9.0.tar.gz
Windows Binary DExMA_1.9.0.zip
macOS Binary (x86_64) DExMA_1.9.0.tgz
macOS Binary (arm64) DExMA_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DExMA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DExMA
Bioc Package Browser https://code.bioconductor.org/browse/DExMA/
Package Short Url https://bioconductor.org/packages/DExMA/
Package Downloads Report Download Stats