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DNAshapeR

This is the development version of DNAshapeR; for the stable release version, see DNAshapeR.

High-throughput prediction of DNA shape features

Bioconductor version: Development (3.18)

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Author: Tsu-Pei Chiu and Federico Comoglio

Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>

Citation (from within R, enter citation("DNAshapeR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DNAshapeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAshapeR")
DNAshapeR HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNA3DStructure, Software, StructuralPrediction
Version 1.29.0
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License GPL-2
Depends R (>= 3.4), GenomicRanges
Imports Rcpp (>= 0.12.1), Biostrings, fields
Linking To Rcpp
Suggests AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
System Requirements
Enhances
URL
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Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DNAshapeR_1.29.0.tar.gz
Windows Binary DNAshapeR_1.29.0.zip (64-bit only)
macOS Binary (x86_64) DNAshapeR_1.29.0.tgz
macOS Binary (arm64) DNAshapeR_1.29.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNAshapeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DNAshapeR
Bioc Package Browser https://code.bioconductor.org/browse/DNAshapeR/
Package Short Url https://bioconductor.org/packages/DNAshapeR/
Package Downloads Report Download Stats