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DelayedMatrixStats

This is the development version of DelayedMatrixStats; for the stable release version, see DelayedMatrixStats.

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Bioconductor version: Development (3.18)

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Author: Peter Hickey [aut, cre], Hervé Pagès [ctb], Aaron Lun [ctb]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("DelayedMatrixStats")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DelayedMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DelayedMatrixStats")
Overview of DelayedMatrixStats HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.23.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License MIT + file LICENSE
Depends MatrixGenerics(>= 1.5.3), DelayedArray(>= 0.17.6)
Imports methods, matrixStats (>= 0.60.0), sparseMatrixStats, Matrix (>= 1.5-0), S4Vectors(>= 0.17.5), IRanges(>= 2.25.10)
Linking To
Suggests testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem, HDF5Array
System Requirements
Enhances
URL https://github.com/PeteHaitch/DelayedMatrixStats
Bug Reports https://github.com/PeteHaitch/DelayedMatrixStats/issues
See More
Depends On Me
Imports Me AUCell, batchelor, biscuiteer, bsseq, CAGEr, celldex, Cepo, compartmap, dmrseq, DropletUtils, FRASER, glmGamPoi, GSVA, methrix, methylSig, mia, minfi, mumosa, NetActivity, PCAtools, recountmethylation, SCArray, scFeatures, scMerge, scran, scuttle, singleCellTK, SingleR, sparrow, SpliceWiz, weitrix
Suggests Me DelayedArray, EWCE, MatrixGenerics, mbkmeans, ScaledMatrix, scPCA, slingshot, tradeSeq, TrajectoryUtils
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DelayedMatrixStats_1.23.0.tar.gz
Windows Binary DelayedMatrixStats_1.23.0.zip
macOS Binary (x86_64) DelayedMatrixStats_1.23.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/DelayedMatrixStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DelayedMatrixStats
Bioc Package Browser https://code.bioconductor.org/browse/DelayedMatrixStats/
Package Short Url https://bioconductor.org/packages/DelayedMatrixStats/
Package Downloads Report Download Stats