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MatrixGenerics

This is the development version of MatrixGenerics; for the stable release version, see MatrixGenerics.

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Bioconductor version: Development (3.18)

S4 generic functions modeled after the 'matrixStats' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.

Author: Constantin Ahlmann-Eltze [aut] , Peter Hickey [aut, cre] , Hervé Pagès [aut]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("MatrixGenerics")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MatrixGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Software
Version 1.13.1
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License Artistic-2.0
Depends matrixStats (>= 1.0.0)
Imports methods
Linking To
Suggests Matrix, sparseMatrixStats, SparseArray, DelayedArray, DelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0)
System Requirements
Enhances
URL https://bioconductor.org/packages/MatrixGenerics
Bug Reports https://github.com/Bioconductor/MatrixGenerics/issues
See More
Depends On Me DelayedArray, DelayedMatrixStats, GenomicFiles, SparseArray, sparseMatrixStats, SummarizedExperiment, VariantAnnotation
Imports Me CoreGx, crisprDesign, demuxSNP, escape, genefilter, glmGamPoi, imcRtools, lineagespot, miaSim, MinimumDistance, PDATK, RaggedExperiment, scater, scFeatures, scone, scPCA, shinyMethyl, spatzie, TENxIO, tLOH, transformGamPoi, universalmotif, VanillaICE
Suggests Me bnem, MungeSumstats
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MatrixGenerics_1.13.1.tar.gz
Windows Binary MatrixGenerics_1.13.1.zip
macOS Binary (x86_64) MatrixGenerics_1.13.1.tgz
macOS Binary (arm64) MatrixGenerics_1.13.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MatrixGenerics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MatrixGenerics
Bioc Package Browser https://code.bioconductor.org/browse/MatrixGenerics/
Package Short Url https://bioconductor.org/packages/MatrixGenerics/
Package Downloads Report Download Stats