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GOsummaries

This is the development version of GOsummaries; for the stable release version, see GOsummaries.

Word cloud summaries of GO enrichment analysis

Bioconductor version: Development (3.18)

A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

Author: Raivo Kolde <raivo.kolde at eesti.ee>

Maintainer: Raivo Kolde <raivo.kolde at eesti.ee>

Citation (from within R, enter citation("GOsummaries")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GOsummaries")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOsummaries")
GOsummaries basics PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, GO, GeneExpression, Software, Visualization
Version 2.37.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License GPL (>= 2)
Depends R (>= 2.15), Rcpp
Imports plyr, grid, gProfileR, reshape2, limma, ggplot2, gtable
Linking To Rcpp
Suggests vegan
System Requirements
Enhances
URL https://github.com/raivokolde/GOsummaries
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GOsummaries_2.37.0.tar.gz
Windows Binary GOsummaries_2.37.0.zip (64-bit only)
macOS Binary (x86_64) GOsummaries_2.37.0.tgz
macOS Binary (arm64) GOsummaries_2.37.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GOsummaries
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOsummaries
Bioc Package Browser https://code.bioconductor.org/browse/GOsummaries/
Package Short Url https://bioconductor.org/packages/GOsummaries/
Package Downloads Report Download Stats