GOsummaries
Word cloud summaries of GO enrichment analysis
Bioconductor version: Release (3.17)
A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.
Author: Raivo Kolde <raivo.kolde at eesti.ee>
Maintainer: Raivo Kolde <raivo.kolde at eesti.ee>
citation("GOsummaries")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOsummaries")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOsummaries")| GOsummaries basics | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GO, GeneExpression, Software, Visualization |
| Version | 2.36.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15), Rcpp |
| Imports | plyr, grid, gProfileR, reshape2, limma, ggplot2, gtable |
| Linking To | Rcpp |
| Suggests | vegan |
| System Requirements | |
| Enhances | |
| URL | https://github.com/raivokolde/GOsummaries |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOsummaries_2.36.0.tar.gz |
| Windows Binary | GOsummaries_2.36.0.zip |
| macOS Binary (x86_64) | GOsummaries_2.36.0.tgz |
| macOS Binary (arm64) | GOsummaries_2.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOsummaries |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOsummaries |
| Bioc Package Browser | https://code.bioconductor.org/browse/GOsummaries/ |
| Package Short Url | https://bioconductor.org/packages/GOsummaries/ |
| Package Downloads Report | Download Stats |