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GRmetrics

This is the development version of GRmetrics; for the stable release version, see GRmetrics.

Calculate growth-rate inhibition (GR) metrics

Bioconductor version: Development (3.18)

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Author: Nicholas Clark

Maintainer: Nicholas Clark <nicholas.clark00 at gmail.com>, Mario Medvedovic <medvedm at ucmail.uc.edu>

Citation (from within R, enter citation("GRmetrics")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GRmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRmetrics")
GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, CellBiology, ImmunoOncology, Software, TimeCourse, Visualization
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL-3
Depends R (>= 4.0), SummarizedExperiment
Imports drc, plotly, ggplot2, S4Vectors, stats
Linking To
Suggests knitr, rmarkdown, BiocStyle, tinytex
System Requirements
Enhances
URL https://github.com/uc-bd2k/GRmetrics
Bug Reports https://github.com/uc-bd2k/GRmetrics/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GRmetrics_1.27.0.tar.gz
Windows Binary GRmetrics_1.27.0.zip
macOS Binary (x86_64) GRmetrics_1.27.0.tgz
macOS Binary (arm64) GRmetrics_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GRmetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GRmetrics
Bioc Package Browser https://code.bioconductor.org/browse/GRmetrics/
Package Short Url https://bioconductor.org/packages/GRmetrics/
Package Downloads Report Download Stats