HybridMTest

This is the development version of HybridMTest; for the stable release version, see HybridMTest.

Hybrid Multiple Testing

Bioconductor version: Development (3.18)

Performs hybrid multiple testing that incorporates method selection and assumption evaluations into the analysis using empirical Bayes probability (EBP) estimates obtained by Grenander density estimation. For instance, for 3-group comparison analysis, Hybrid Multiple testing considers EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test of normality as weigth. Instead of just using EBPs from F-test only or using H-test only, this methodology combines both types of EBPs through EBPs from Shapiro Wilk test of normality. This methodology uses then the law of total EBPs.

Author: Stan Pounds <stanley.pounds at stjude.org>, Demba Fofana <demba.fofana at stjude.org>

Maintainer: Demba Fofana <demba.fofana at stjude.org>

Citation (from within R, enter citation("HybridMTest")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HybridMTest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HybridMTest")

Hybrid Multiple Testing	PDF	R Script
Reference Manual	PDF

Details

biocViews	GeneExpression, Genetics, Microarray, Software
Version	1.45.0
In Bioconductor since	BioC 2.10 (R-2.15) (11.5 years)
License	GPL Version 2 or later
Depends	R (>= 2.9.0), Biobase, fdrtool, MASS, survival
Imports	stats
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Imports Me	APAlyzer
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HybridMTest_1.45.0.tar.gz
Windows Binary	HybridMTest_1.45.0.zip
macOS Binary (x86_64)	HybridMTest_1.45.0.tgz
macOS Binary (arm64)	HybridMTest_1.45.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HybridMTest
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HybridMTest
Bioc Package Browser	https://code.bioconductor.org/browse/HybridMTest/
Package Short Url	https://bioconductor.org/packages/HybridMTest/
Package Downloads Report	Download Stats