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MiChip

This is the development version of MiChip; for the stable release version, see MiChip.

MiChip Parsing and Summarizing Functions

Bioconductor version: Development (3.18)

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

Author: Jonathon Blake <blake at embl.de>

Maintainer: Jonathon Blake <blake at embl.de>

Citation (from within R, enter citation("MiChip")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MiChip")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiChip")
MiChip miRNA Microarray Processing PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Preprocessing, Software
Version 1.55.0
In Bioconductor since BioC 2.5 (R-2.10) (14 years)
License GPL (>= 2)
Depends R (>= 2.3.0), Biobase
Imports Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MiChip_1.55.0.tar.gz
Windows Binary MiChip_1.55.0.zip
macOS Binary (x86_64) MiChip_1.55.0.tgz
macOS Binary (arm64) MiChip_1.55.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MiChip
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MiChip
Bioc Package Browser https://code.bioconductor.org/browse/MiChip/
Package Short Url https://bioconductor.org/packages/MiChip/
Package Downloads Report Download Stats