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PCAN

This is the development version of PCAN; for the stable release version, see PCAN.

Phenotype Consensus ANalysis (PCAN)

Bioconductor version: Development (3.18)

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Author: Matthew Page and Patrice Godard

Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>

Citation (from within R, enter citation("PCAN")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PCAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCAN")
Assessing gene relevance for a set of phenotypes HTML R Script
Reference Manual PDF

Details

biocViews Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation
Version 1.29.0
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License CC BY-NC-ND 4.0
Depends R (>= 3.3), BiocParallel
Imports grDevices, stats
Linking To
Suggests BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCAN_1.29.0.tar.gz
Windows Binary PCAN_1.29.0.zip
macOS Binary (x86_64) PCAN_1.29.0.tgz
macOS Binary (arm64) PCAN_1.29.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PCAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCAN
Bioc Package Browser https://code.bioconductor.org/browse/PCAN/
Package Short Url https://bioconductor.org/packages/PCAN/
Package Downloads Report Download Stats