QuartPAC

This is the development version of QuartPAC; for the stable release version, see QuartPAC.

Identification of mutational clusters in protein quaternary structures.

Bioconductor version: Development (3.18)

Identifies clustering of somatic mutations in proteins over the entire quaternary structure.

Author: Gregory Ryslik, Yuwei Cheng, Hongyu Zhao

Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>

Citation (from within R, enter citation("QuartPAC")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("QuartPAC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("QuartPAC")

SpacePAC: Identifying mutational clusters in 3D protein space using simulation	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	Clustering, Proteomics, Software, SomaticMutation
Version	1.33.0
In Bioconductor since	BioC 3.1 (R-3.2) (8.5 years)
License	GPL-2
Depends	iPAC, GraphPAC, SpacePAC, data.table
Imports
Linking To
Suggests	RUnit, BiocGenerics, rgl
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	QuartPAC_1.33.0.tar.gz
Windows Binary	QuartPAC_1.33.0.zip
macOS Binary (x86_64)	QuartPAC_1.33.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/QuartPAC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/QuartPAC
Bioc Package Browser	https://code.bioconductor.org/browse/QuartPAC/
Package Short Url	https://bioconductor.org/packages/QuartPAC/
Package Downloads Report	Download Stats