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SpacePAC

This is the development version of SpacePAC; for the stable release version, see SpacePAC.

Identification of Mutational Clusters in 3D Protein Space via Simulation.

Bioconductor version: Development (3.18)

Identifies clustering of somatic mutations in proteins via a simulation approach while considering the protein's tertiary structure.

Author: Gregory Ryslik, Hongyu Zhao

Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>

Citation (from within R, enter citation("SpacePAC")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SpacePAC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SpacePAC")
SpacePAC: Identifying mutational clusters in 3D protein space using simulation PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, Proteomics, Software
Version 1.39.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL-2
Depends R (>= 2.15), iPAC
Imports
Linking To
Suggests RUnit, BiocGenerics, rgl
System Requirements
Enhances
URL
See More
Depends On Me QuartPAC
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SpacePAC_1.39.0.tar.gz
Windows Binary SpacePAC_1.39.0.zip
macOS Binary (x86_64) SpacePAC_1.39.0.tgz
macOS Binary (arm64) SpacePAC_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SpacePAC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SpacePAC
Bioc Package Browser https://code.bioconductor.org/browse/SpacePAC/
Package Short Url https://bioconductor.org/packages/SpacePAC/
Package Downloads Report Download Stats