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RedeR

This is the development version of RedeR; for the stable release version, see RedeR.

Interactive visualization and manipulation of nested networks

Bioconductor version: Development (3.18)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RedeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")
RedeR: hierarchical networks HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GUI, GraphAndNetwork, Network, Software, SystemsBiology, Visualization
Version 2.5.2
In Bioconductor since BioC 2.9 (R-2.14) (12 years)
License GPL (>= 3)
Depends R (>= 4.0), methods
Imports igraph
Linking To
Suggests BiocStyle, knitr, rmarkdown, markdown, TreeAndLeaf
System Requirements Java Runtime Environment (Java>= 11)
Enhances
URL http://genomebiology.com/2012/13/4/R29
See More
Depends On Me Fletcher2013b
Imports Me PANR, RTN, transcriptogramer, TreeAndLeaf
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_2.5.2.tar.gz
Windows Binary RedeR_2.5.2.zip
macOS Binary (x86_64) RedeR_2.5.2.tgz
macOS Binary (arm64) RedeR_2.5.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/RedeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RedeR
Bioc Package Browser https://code.bioconductor.org/browse/RedeR/
Package Short Url https://bioconductor.org/packages/RedeR/
Package Downloads Report Download Stats