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PANR

This is the development version of PANR; for the stable release version, see PANR.

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor version: Development (3.18)

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

Author: Xin Wang <xin_wang at hms.harvard.edu>

Maintainer: Xin Wang <xin_wang at hms.harvard.edu>

Citation (from within R, enter citation("PANR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PANR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PANR")
Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, Clustering, GraphAndNetwork, ImmunoOncology, NetworkInference, Software, Visualization
Version 1.47.0
In Bioconductor since BioC 2.9 (R-2.14) (12 years)
License Artistic-2.0
Depends R (>= 2.14), igraph
Imports graphics, grDevices, MASS, methods, pvclust, stats, utils, RedeR
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PANR_1.47.0.tar.gz
Windows Binary PANR_1.47.0.zip
macOS Binary (x86_64) PANR_1.47.0.tgz
macOS Binary (arm64) PANR_1.47.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PANR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PANR
Bioc Package Browser https://code.bioconductor.org/browse/PANR/
Package Short Url https://bioconductor.org/packages/PANR/
Package Downloads Report Download Stats