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ResidualMatrix

This is the development version of ResidualMatrix; for the stable release version, see ResidualMatrix.

Creating a DelayedMatrix of Regression Residuals

Bioconductor version: Development (3.18)

Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("ResidualMatrix")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ResidualMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ResidualMatrix")
Using the ResidualMatrix HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BatchEffect, DataRepresentation, ExperimentalDesign, Regression, Software
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends
Imports methods, Matrix, S4Vectors, DelayedArray
Linking To
Suggests testthat, BiocStyle, knitr, rmarkdown, BiocSingular
System Requirements
Enhances
URL https://github.com/LTLA/ResidualMatrix
Bug Reports https://github.com/LTLA/ResidualMatrix/issues
See More
Depends On Me
Imports Me batchelor
Suggests Me BiocSingular, chihaya, scran
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ResidualMatrix_1.11.0.tar.gz
Windows Binary ResidualMatrix_1.11.0.zip
macOS Binary (x86_64) ResidualMatrix_1.11.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ResidualMatrix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ResidualMatrix
Bioc Package Browser https://code.bioconductor.org/browse/ResidualMatrix/
Package Short Url https://bioconductor.org/packages/ResidualMatrix/
Package Downloads Report Download Stats