This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

TNBC.CMS

This is the development version of TNBC.CMS; for the stable release version, see TNBC.CMS.

TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes

Bioconductor version: Development (3.18)

This package implements a machine learning-based classifier for the assignment of consensus molecular subtypes to TNBC samples. It also provides functions to summarize genomic and clinical characteristics.

Author: Doyeong Yu, Jihyun Kim, In Hae Park, Charny Park

Maintainer: Doyeong Yu <parklab.bi at gmail.com>

Citation (from within R, enter citation("TNBC.CMS")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TNBC.CMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TNBC.CMS")
TNBC.CMS.pdf PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, Clustering, GeneExpression, GenePrediction, Software, SupportVectorMachine
Version 1.17.0
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 3.6.0), e1071, quadprog, SummarizedExperiment
Imports GSVA(>= 1.26.0), pheatmap, grDevices, RColorBrewer, pracma, GGally, R.utils, forestplot, ggplot2, ggpubr, survival, grid, stats, methods
Linking To
Suggests knitr
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TNBC.CMS_1.17.0.tar.gz
Windows Binary TNBC.CMS_1.17.0.zip
macOS Binary (x86_64) TNBC.CMS_1.17.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TNBC.CMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TNBC.CMS
Bioc Package Browser https://code.bioconductor.org/browse/TNBC.CMS/
Package Short Url https://bioconductor.org/packages/TNBC.CMS/
Package Downloads Report Download Stats