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TransView

This is the development version of TransView; for the stable release version, see TransView.

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Bioconductor version: Development (3.18)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TransView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")
An introduction to TransView PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, ImmunoOncology, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version 1.45.0
In Bioconductor since BioC 2.11 (R-2.15) (11 years)
License GPL-3
Depends methods, GenomicRanges
Imports BiocGenerics, S4Vectors(>= 0.9.25), IRanges, zlibbioc, gplots
Linking To Rhtslib(>= 1.99.1)
Suggests RUnit, pasillaBamSubset, BiocManager
System Requirements GNU make
Enhances
URL http://bioconductor.org/packages/release/bioc/html/TransView.html
See More
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TransView_1.45.0.tar.gz
Windows Binary TransView_1.45.0.zip
macOS Binary (x86_64) TransView_1.45.0.tgz
macOS Binary (arm64) TransView_1.45.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TransView
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TransView
Bioc Package Browser https://code.bioconductor.org/browse/TransView/
Package Short Url https://bioconductor.org/packages/TransView/
Package Downloads Report Download Stats