TurboNorm
This is the development version of TurboNorm; for the stable release version, see TurboNorm.
A fast scatterplot smoother suitable for microarray normalization
Bioconductor version: Development (3.18)
A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.
Author: Maarten van Iterson and Chantal van Leeuwen
Maintainer: Maarten van Iterson <mviterson at gmail.com>
citation("TurboNorm")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TurboNorm")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CpGIsland, DNAMethylation, MethylationArray, Microarray, Normalization, OneChannel, Preprocessing, Software, TwoChannel |
| Version | 1.49.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (12.5 years) |
| License | LGPL |
| Depends | R (>= 2.12.0), convert, limma(>= 1.7.0), marray |
| Imports | stats, grDevices, affy, lattice |
| Linking To | |
| Suggests | BiocStyle, affydata |
| System Requirements | |
| Enhances | |
| URL | http://www.humgen.nl/MicroarrayAnalysisGroup.html |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | TurboNorm_1.49.0.zip (64-bit only) |
| macOS Binary (x86_64) | TurboNorm_1.49.0.tgz |
| macOS Binary (arm64) | TurboNorm_1.49.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TurboNorm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TurboNorm |
| Bioc Package Browser | https://code.bioconductor.org/browse/TurboNorm/ |
| Package Short Url | https://bioconductor.org/packages/TurboNorm/ |
| Package Downloads Report | Download Stats |