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affydata

This is the development version of affydata; for the stable release version, see affydata.

Affymetrix Data for Demonstration Purpose

Bioconductor version: Development (3.18)

Example datasets of a slightly large size. They represent 'real world examples', unlike the artificial examples included in the package affy.

Author: Laurent Gautier <laurent at cbs.dtu.dk>

Maintainer: Robert D Shear <rshear at ds.dfci.harvard.edu>

Citation (from within R, enter citation("affydata")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("affydata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affydata")
affydata primer PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, MicroarrayData, Tissue, TissueMicroarrayData
Version 1.49.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License GPL (>= 2)
Depends R (>= 2.4.0), affy(>= 1.23.4)
Imports methods
Linking To
Suggests hgu95av2cdf, hgu133acdf
System Requirements
Enhances
URL https://bioconductor.org/packages/affydata
Bug Reports https://github.com/rafalab/affydata/issues
See More
Depends On Me affyContam
Imports Me
Suggests Me affy, affycoretools, affyPLM, arrayMvout, bgx, Biostrings, farms, gcrma, Harman, mimager, puma, pvac, RefPlus, sscore, TurboNorm, vsn
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affydata_1.49.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/affydata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affydata
Package Short Url https://bioconductor.org/packages/affydata/
Package Downloads Report Download Stats