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aCGH

This is the development version of aCGH; for the stable release version, see aCGH.

Classes and functions for Array Comparative Genomic Hybridization data

Bioconductor version: Development (3.18)

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Citation (from within R, enter citation("aCGH")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("aCGH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aCGH")
aCGH Overview PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, DataImport, Genetics, Software
Version 1.79.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License GPL-2
Depends R (>= 2.10), cluster, survival, multtest
Imports Biobase, grDevices, graphics, methods, stats, splines, utils
Linking To
Suggests
System Requirements
Enhances
URL
See More
Depends On Me CRImage
Imports Me ADaCGH2, rCGH, snapCGH
Suggests Me beadarraySNP
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aCGH_1.79.0.tar.gz
Windows Binary aCGH_1.79.0.zip (64-bit only)
macOS Binary (x86_64) aCGH_1.79.0.tgz
macOS Binary (arm64) aCGH_1.79.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/aCGH
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/aCGH
Bioc Package Browser https://code.bioconductor.org/browse/aCGH/
Package Short Url https://bioconductor.org/packages/aCGH/
Package Downloads Report Download Stats