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affycomp

This is the development version of affycomp; for the stable release version, see affycomp.

Graphics Toolbox for Assessment of Affymetrix Expression Measures

Bioconductor version: Development (3.18)

The package contains functions that can be used to compare expression measures for Affymetrix Oligonucleotide Arrays.

Author: Rafael A. Irizarry <rafa at ds.dfci.harvard.edu> and Zhijin Wu <zwu at stat.brown.edu> with contributions from Simon Cawley <simon_cawley at affymetrix.com>

Maintainer: Robert D. Shear <rshear at ds.dfci.harvard.edu>

Citation (from within R, enter citation("affycomp")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("affycomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affycomp")
affycomp primer PDF R Script
Reference Manual PDF

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.77.2
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License GPL (>= 2)
Depends R (>= 2.13.0), methods, Biobase(>= 2.3.3)
Imports
Linking To
Suggests splines, affycompData
System Requirements
Enhances
URL https://bioconductor.org/packages/affycomp
Bug Reports https://github.com/rafalab/affycomp/issues
See More
Depends On Me affycompData
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affycomp_1.77.2.tar.gz
Windows Binary affycomp_1.77.2.zip
macOS Binary (x86_64) affycomp_1.77.2.tgz
macOS Binary (arm64) affycomp_1.77.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/affycomp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affycomp
Bioc Package Browser https://code.bioconductor.org/browse/affycomp/
Package Short Url https://bioconductor.org/packages/affycomp/
Package Downloads Report Download Stats