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arrayQualityMetrics

This is the development version of arrayQualityMetrics; for the stable release version, see arrayQualityMetrics.

Quality metrics report for microarray data sets

Bioconductor version: Development (3.18)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("arrayQualityMetrics")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("arrayQualityMetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.57.0
In Bioconductor since BioC 2.1 (R-2.6) (16 years)
License LGPL (>= 2)
Depends
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, utils, vsn(>= 3.23.3), XML, svglite
Linking To
Suggests ALLMLL, CCl4, BiocStyle, knitr
System Requirements
Enhances
URL
Bug Reports https://github.com/grimbough/arrayQualityMetrics/issues
See More
Depends On Me maEndToEnd
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary arrayQualityMetrics_3.57.0.zip
macOS Binary (x86_64) arrayQualityMetrics_3.57.0.tgz
macOS Binary (arm64) arrayQualityMetrics_3.57.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/arrayQualityMetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/arrayQualityMetrics
Bioc Package Browser https://code.bioconductor.org/browse/arrayQualityMetrics/
Package Short Url https://bioconductor.org/packages/arrayQualityMetrics/
Package Downloads Report Download Stats