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bayNorm

This is the development version of bayNorm; for the stable release version, see bayNorm.

Single-cell RNA sequencing data normalization

Bioconductor version: Development (3.18)

bayNorm is used for normalizing single-cell RNA-seq data.

Author: Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]

Maintainer: Wenhao Tang <wt215 at ic.ac.uk>

Citation (from within R, enter citation("bayNorm")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bayNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bayNorm")
Introduction to bayNorm HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software
Version 1.19.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License GPL (>= 2)
Depends R (>= 3.5)
Imports Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, Matrix, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils
Linking To Rcpp, RcppArmadillo, RcppProgress
Suggests knitr, rmarkdown, BiocStyle, devtools, testthat
System Requirements
Enhances
URL https://github.com/WT215/bayNorm
Bug Reports https://github.com/WT215/bayNorm/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bayNorm_1.19.0.tar.gz
Windows Binary bayNorm_1.19.0.zip
macOS Binary (x86_64) bayNorm_1.19.0.tgz
macOS Binary (arm64) bayNorm_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bayNorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bayNorm
Bioc Package Browser https://code.bioconductor.org/browse/bayNorm/
Package Short Url https://bioconductor.org/packages/bayNorm/
Package Downloads Report Download Stats