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cnvGSA

This is the development version of cnvGSA; for the stable release version, see cnvGSA.

Gene Set Analysis of (Rare) Copy Number Variants

Bioconductor version: Development (3.18)

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

Author: Daniele Merico <daniele.merico at gmail.com>, Robert Ziman <rziman at gmail.com>; packaged by Joseph Lugo <joseph.r.lugo at gmail.com>

Maintainer: Joseph Lugo <joseph.r.lugo at gmail.com>

Citation (from within R, enter citation("cnvGSA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cnvGSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cnvGSA")
cnvGSA - Gene-Set Analysis of Rare Copy Number Variants PDF
cnvGSAUsersGuide.pdf PDF
Reference Manual PDF

Details

biocViews MultipleComparison, Software
Version 1.45.0
In Bioconductor since BioC 2.10 (R-2.15) (11.5 years)
License LGPL
Depends brglm, doParallel, foreach, GenomicRanges, methods, splitstackshape
Imports
Linking To
Suggests cnvGSAdata, org.Hs.eg.db
System Requirements
Enhances
URL
See More
Depends On Me cnvGSAdata
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cnvGSA_1.45.0.tar.gz
Windows Binary cnvGSA_1.45.0.zip
macOS Binary (x86_64) cnvGSA_1.45.0.tgz
macOS Binary (arm64) cnvGSA_1.45.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cnvGSA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cnvGSA
Bioc Package Browser https://code.bioconductor.org/browse/cnvGSA/
Package Short Url https://bioconductor.org/packages/cnvGSA/
Package Downloads Report Download Stats