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codelink

This is the development version of codelink; for the stable release version, see codelink.

Manipulation of Codelink microarray data

Bioconductor version: Development (3.18)

This package facilitates reading, preprocessing and manipulating Codelink microarray data. The raw data must be exported as text file using the Codelink software.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("codelink")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("codelink")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("codelink")
Codelink Intruction PDF R Script
Codelink Legacy PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Microarray, OneChannel, Preprocessing, Software
Version 1.69.0
In Bioconductor since BioC 1.8 (R-2.3) (17.5 years)
License GPL-2
Depends R (>= 2.10), BiocGenerics(>= 0.3.2), methods, Biobase(>= 2.17.8), limma
Imports annotate
Linking To
Suggests genefilter, parallel, knitr
System Requirements
Enhances
URL https://github.com/ddiez/codelink
Bug Reports https://github.com/ddiez/codelink/issues
See More
Depends On Me
Imports Me
Suggests Me AgiMicroRna, MAQCsubset
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package codelink_1.69.0.tar.gz
Windows Binary codelink_1.69.0.zip (64-bit only)
macOS Binary (x86_64) codelink_1.69.0.tgz
macOS Binary (arm64) codelink_1.69.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/codelink
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/codelink
Bioc Package Browser https://code.bioconductor.org/browse/codelink/
Package Short Url https://bioconductor.org/packages/codelink/
Package Downloads Report Download Stats