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copa

This is the development version of copa; for the stable release version, see copa.

Functions to perform cancer outlier profile analysis.

Bioconductor version: Development (3.18)

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("copa")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("copa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("copa")
copa Overview PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, OneChannel, Software, TwoChannel, Visualization
Version 1.69.0
In Bioconductor since BioC 1.8 (R-2.3) (17.5 years)
License Artistic-2.0
Depends Biobase, methods
Imports
Linking To
Suggests colonCA
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package copa_1.69.0.tar.gz
Windows Binary copa_1.69.0.zip
macOS Binary (x86_64) copa_1.69.0.tgz
macOS Binary (arm64) copa_1.69.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/copa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/copa
Bioc Package Browser https://code.bioconductor.org/browse/copa/
Package Short Url https://bioconductor.org/packages/copa/
Package Downloads Report Download Stats