This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

covEB

This is the development version of covEB; for the stable release version, see covEB.

Empirical Bayes estimate of block diagonal covariance matrices

Bioconductor version: Development (3.18)

Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.

Author: C. Pacini

Maintainer: C. Pacini <clarepacini at gmail.com>

Citation (from within R, enter citation("covEB")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("covEB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("covEB")
covEB PDF R Script
Reference Manual PDF

Details

biocViews Bayesian, GeneExpression, ImmunoOncology, Microarray, Preprocessing, RNASeq, Software, StatisticalMethod
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL-3
Depends R (>= 3.3), mvtnorm, igraph, gsl, Biobase, stats, LaplacesDemon, Matrix
Imports
Linking To
Suggests curatedBladderData
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package covEB_1.27.0.tar.gz
Windows Binary covEB_1.27.0.zip
macOS Binary (x86_64) covEB_1.27.0.tgz
macOS Binary (arm64) covEB_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/covEB
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/covEB
Bioc Package Browser https://code.bioconductor.org/browse/covEB/
Package Short Url https://bioconductor.org/packages/covEB/
Package Downloads Report Download Stats