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customCMPdb

This is the development version of customCMPdb; for the stable release version, see customCMPdb.

Customize and Query Compound Annotation Database

Bioconductor version: Development (3.18)

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("customCMPdb")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("customCMPdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customCMPdb")
customCMPdb HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationHubSoftware, Cheminformatics, Software
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache
Linking To
Suggests knitr, rmarkdown, testthat, BiocStyle
System Requirements
Enhances
URL https://github.com/yduan004/customCMPdb/
Bug Reports https://github.com/yduan004/customCMPdb/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package customCMPdb_1.11.0.tar.gz
Windows Binary customCMPdb_1.11.0.zip
macOS Binary (x86_64) customCMPdb_1.11.0.tgz
macOS Binary (arm64) customCMPdb_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/customCMPdb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/customCMPdb
Bioc Package Browser https://code.bioconductor.org/browse/customCMPdb/
Package Short Url https://bioconductor.org/packages/customCMPdb/
Package Downloads Report Download Stats