BiocFileCache

This is the development version of BiocFileCache; for the stable release version, see BiocFileCache.

Manage Files Across Sessions

Bioconductor version: Development (3.18)

This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.

Author: Lori Shepherd [aut, cre], Martin Morgan [aut]

Maintainer: Lori Shepherd <lori.shepherd at roswellpark.org>

Citation (from within R, enter citation("BiocFileCache")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocFileCache")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocFileCache")

BiocFileCache: Managing File Resources Across Sessions	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DataImport, Software
Version	2.9.1
In Bioconductor since	BioC 3.5 (R-3.4) (6.5 years)
License	Artistic-2.0
Depends	R (>= 3.4.0), dbplyr (>= 1.0.0)
Imports	methods, stats, utils, dplyr, RSQLite, DBI, filelock, curl, httr
Linking To
Suggests	testthat, knitr, BiocStyle, rmarkdown, rtracklayer
System Requirements
Enhances
URL
Bug Reports	https://github.com/Bioconductor/BiocFileCache/issues

Depends On Me	AnnotationHub, ExperimentHub, JASPAR2022, RcwlPipelines, scATAC.Explorer, TMExplorer
Imports Me	AMARETTO, atSNP, autonomics, BayesSpace, BiocCheck, BiocHail, BiocPkgTools, biodb, biomaRt, BioPlex, brendaDb, bugsigdbr, cbaf, cBioPortalData, CBNplot, CellBench, CTDquerier, customCMPdb, CytoPipeline, DNAZooData, drugTargetInteractions, easyRNASeq, enhancerHomologSearch, EnMCB, EnrichmentBrowser, EpiTxDb, fgga, fourDNData, GenomicScores, GenomicSuperSignature, GSEABenchmarkeR, gwascat, hca, HiContactsData, HPO.db, iSEEindex, MBQN, MetaScope, MicrobiomeBenchmarkData, MPO.db, netDx, NxtIRFdata, ontoProc, org.Mxanthus.db, Organism.dplyr, orthosData, PANTHER.db, PhIPData, psichomics, recount3, recountmethylation, regutools, ReUseData, RiboDiPA, rpx, scviR, sesame, SFEData, signeR, SingleCellMultiModal, SingscoreAMLMutations, SpatialExperiment, spatialLIBD, SpatialOmicsOverlay, SpliceWiz, terraTCGAdata, TFutils, tomoseqr, tximeta, UMI4Cats, uncoverappLib, UniProt.ws, waddR
Suggests Me	AnnotationForge, bambu, BiocOncoTK, BiocSet, chipseqDB, emtdata, EpiCompare, fastreeR, FLAMES, fluentGenomics, GRaNIE, HiCDCPlus, HiCExperiment, HiCool, HighlyReplicatedRNASeq, HumanTranscriptomeCompendium, MethReg, MethylSeqData, msigdb, Nebulosa, progeny, qsvaR, scRNAseq, seqsetvis, simpleSingleCell, spatialHeatmap, structToolbox, TCGAutils, TENxBrainData, TENxPBMCData, TREG, zellkonverter
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocFileCache_2.9.1.tar.gz
Windows Binary	BiocFileCache_2.9.1.zip (64-bit only)
macOS Binary (x86_64)	BiocFileCache_2.9.1.tgz
macOS Binary (arm64)	BiocFileCache_2.9.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BiocFileCache
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocFileCache
Bioc Package Browser	https://code.bioconductor.org/browse/BiocFileCache/
Package Short Url	https://bioconductor.org/packages/BiocFileCache/
Package Downloads Report	Download Stats