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dagLogo

This is the development version of dagLogo; for the stable release version, see dagLogo.

dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory

Bioconductor version: Development (3.18)

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

Author: Jianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at duke.edu>

Citation (from within R, enter citation("dagLogo")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("dagLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")
dagLogo Vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews SequenceMatching, Software, Visualization
Version 1.39.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL (>=2)
Depends R (>= 3.0.1), methods, grid
Imports pheatmap, Biostrings, UniProt.ws, BiocGenerics, utils, biomaRt, motifStack, httr
Linking To
Suggests XML, grImport, grImport2, BiocStyle, knitr, rmarkdown, testthat
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dagLogo_1.39.0.tar.gz
Windows Binary dagLogo_1.39.0.zip
macOS Binary (x86_64) dagLogo_1.39.0.tgz
macOS Binary (arm64) dagLogo_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/dagLogo
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dagLogo
Bioc Package Browser https://code.bioconductor.org/browse/dagLogo/
Package Short Url https://bioconductor.org/packages/dagLogo/
Package Downloads Report Download Stats