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UniProt.ws

This is the development version of UniProt.ws; for the stable release version, see UniProt.ws.

R Interface to UniProt Web Services

Bioconductor version: Development (3.18)

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("UniProt.ws")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")
UniProt.ws: A package for retrieving data from the UniProt web service HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, BioCarta, GO, Infrastructure, KEGG, Software
Version 2.41.5
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License Artistic-2.0
Depends BiocGenerics, methods, RSQLite, utils
Imports AnnotationDbi, BiocFileCache, BiocBaseUtils, httr, httpcache, jsonlite, progress, rjsoncons
Linking To
Suggests BiocStyle, knitr, rmarkdown, RUnit
System Requirements
Enhances
URL https://github.com/Bioconductor/UniProt.ws
Bug Reports https://github.com/Bioconductor/UniProt.ws/issues
See More
Depends On Me
Imports Me dagLogo, drugTargetInteractions
Suggests Me cleaver, qPLEXanalyzer
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package UniProt.ws_2.41.5.tar.gz
Windows Binary UniProt.ws_2.41.5.zip
macOS Binary (x86_64) UniProt.ws_2.41.5.tgz
macOS Binary (arm64) UniProt.ws_2.41.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/UniProt.ws
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/UniProt.ws
Bioc Package Browser https://code.bioconductor.org/browse/UniProt.ws/
Package Short Url https://bioconductor.org/packages/UniProt.ws/
Package Downloads Report Download Stats