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diffcoexp

This is the development version of diffcoexp; for the stable release version, see diffcoexp.

Differential Co-expression Analysis

Bioconductor version: Development (3.18)

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Author: Wenbin Wei, Sandeep Amberkar, Winston Hide

Maintainer: Wenbin Wei <wenbin.wei2 at durham.ac.uk>

Citation (from within R, enter citation("diffcoexp")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("diffcoexp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Coverage, DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel
Version 1.21.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License GPL (>2)
Depends R (>= 3.5), WGCNA, SummarizedExperiment
Imports stats, DiffCorr, psych, igraph, BiocGenerics
Linking To
Suggests GEOquery
System Requirements
Enhances
URL https://github.com/hidelab/diffcoexp
See More
Depends On Me
Imports Me ExpHunterSuite
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary diffcoexp_1.21.0.zip
macOS Binary (x86_64) diffcoexp_1.21.0.tgz
macOS Binary (arm64) diffcoexp_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/diffcoexp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diffcoexp
Bioc Package Browser https://code.bioconductor.org/browse/diffcoexp/
Package Short Url https://bioconductor.org/packages/diffcoexp/
Package Downloads Report Download Stats