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eds

This is the development version of eds; for the stable release version, see eds.

eds: Low-level reader for Alevin EDS format

Bioconductor version: Development (3.18)

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

Author: Avi Srivastava [aut, cre], Michael Love [aut, ctb]

Maintainer: Avi Srivastava <asrivastava at cs.stonybrook.edu>

Citation (from within R, enter citation("eds")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("eds")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eds")
eds: Low-level reader function for Alevin EDS format HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, RNASeq, Sequencing, SingleCell, Software
Version 1.3.0
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License GPL-2
Depends Matrix
Imports Rcpp
Linking To Rcpp
Suggests knitr, tximportData, testthat (>= 3.0.0)
System Requirements C++11
Enhances
URL https://github.com/mikelove/eds
See More
Depends On Me
Imports Me singleCellTK
Suggests Me tximport
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eds_1.3.0.tar.gz
Windows Binary eds_1.3.0.zip
macOS Binary (x86_64) eds_1.3.0.tgz
macOS Binary (arm64) eds_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eds
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/eds
Bioc Package Browser https://code.bioconductor.org/browse/eds/
Package Short Url https://bioconductor.org/packages/eds/
Package Downloads Report Download Stats