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tximportData

This is the development version of tximportData; for the stable release version, see tximportData.

tximportData

Bioconductor version: Development (3.18)

This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. alevin example output is also included. Forr details on version numbers, sample information, and details on calls, see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("tximportData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tximportData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tximportData")
Sample output files for tximport HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, RNASeqData, SequencingData
Version 1.29.0
License GPL (>= 2)
Depends
Imports
Linking To
Suggests knitr, markdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me TDbasedUFE
Suggests Me DESeq2, eds, fishpond, HumanTranscriptomeCompendium, tximeta, tximport, variancePartition
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tximportData_1.29.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/tximportData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tximportData
Package Short Url https://bioconductor.org/packages/tximportData/
Package Downloads Report Download Stats