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flowCut

This is the development version of flowCut; for the stable release version, see flowCut.

Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Bioconductor version: Development (3.18)

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

Author: Justin Meskas [cre, aut], Sherrie Wang [aut]

Maintainer: Justin Meskas <justinmeskas at gmail.com>

Citation (from within R, enter citation("flowCut")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowCut")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCut")
_**flowCut**_: Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, FlowCytometry, Preprocessing, QualityControl, Software
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License Artistic-2.0
Depends R (>= 3.4), flowCore
Imports flowDensity(>= 1.13.1), Cairo, e1071, grDevices, graphics, stats, methods
Linking To
Suggests RUnit, BiocGenerics, knitr, markdown, rmarkdown
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowCut_1.11.0.tar.gz
Windows Binary flowCut_1.11.0.zip
macOS Binary (x86_64) flowCut_1.11.0.tgz
macOS Binary (arm64) flowCut_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowCut
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowCut
Bioc Package Browser https://code.bioconductor.org/browse/flowCut/
Package Short Url https://bioconductor.org/packages/flowCut/
Package Downloads Report Download Stats