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flowDensity

This is the development version of flowDensity; for the stable release version, see flowDensity.

Sequential Flow Cytometry Data Gating

Bioconductor version: Development (3.18)

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Citation (from within R, enter citation("flowDensity")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowDensity")
Introduction to automated gating HTML R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews Bioinformatics, Cancer, CellBiology, Clustering, DataRepresentation, DensityGating, FlowCytData, FlowCytometry, Software, StemCell
Version 1.35.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License Artistic-2.0
Depends
Imports flowCore, graphics, flowViz(>= 1.46.1), car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.33.1), methods, stats, grDevices
Linking To
Suggests knitr, rmarkdown
System Requirements xml2, GNU make, C++11
Enhances
URL
See More
Depends On Me
Imports Me cyanoFilter, ddPCRclust, flowCut
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowDensity_1.35.0.tar.gz
Windows Binary flowDensity_1.35.0.zip (64-bit only)
macOS Binary (x86_64) flowDensity_1.35.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowDensity
Bioc Package Browser https://code.bioconductor.org/browse/flowDensity/
Package Short Url https://bioconductor.org/packages/flowDensity/
Package Downloads Report Download Stats