flowStats
This is the development version of flowStats; for the stable release version, see flowStats.
Statistical methods for the analysis of flow cytometry data
Bioconductor version: Development (3.18)
Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.
Author: Florian Hahne, Nishant Gopalakrishnan, Alireza Hadj Khodabakhshi, Chao-Jen Wong, Kyongryun Lee
Maintainer: Greg Finak <greg at ozette.com>, Mike Jiang <mike at ozette.com>
citation("flowStats")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("flowStats")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowStats")| flowStats Overview | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, FlowCytometry, ImmunoOncology, Software |
| Version | 4.13.1 |
| In Bioconductor since | BioC 2.4 (R-2.9) (14.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.2) |
| Imports | BiocGenerics, MASS, flowCore(>= 1.99.6), flowWorkspace, ncdfFlow(>= 2.19.5), flowViz, fda (>= 2.2.6), Biobase, methods, grDevices, graphics, stats, cluster, utils, KernSmooth, lattice, ks, RColorBrewer, rrcov, corpcor, mnormt, clue |
| Linking To | |
| Suggests | xtable, testthat, openCyto, ggcyto, ggridges |
| System Requirements | |
| Enhances | RBGL, graph |
| URL | http://www.github.com/RGLab/flowStats |
| Bug Reports | http://www.github.com/RGLab/flowStats/issues |
See More
| Depends On Me | flowVS, highthroughputassays |
| Imports Me | |
| Suggests Me | cydar, flowClust, flowCore, flowTime, flowViz, ggcyto, ncdfFlow, openCyto |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowStats_4.13.1.tar.gz |
| Windows Binary | flowStats_4.13.0.zip |
| macOS Binary (x86_64) | flowStats_4.13.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/flowStats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowStats |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowStats/ |
| Package Short Url | https://bioconductor.org/packages/flowStats/ |
| Package Downloads Report | Download Stats |