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gespeR

This is the development version of gespeR; for the stable release version, see gespeR.

Gene-Specific Phenotype EstimatoR

Bioconductor version: Development (3.18)

Estimates gene-specific phenotypes from off-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on-targeted and off-targeted genes, using a regularized linear regression model.

Author: Fabian Schmich

Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>

Citation (from within R, enter citation("gespeR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gespeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CellBasedAssays, GeneTarget, ImmunoOncology, Preprocessing, Regression, Software, Visualization
Version 1.33.0
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License GPL-3
Depends methods, graphics, ggplot2, R (>= 2.10)
Imports Matrix, glmnet, cellHTS2, Biobase, biomaRt, doParallel, parallel, foreach, reshape2, dplyr
Linking To
Suggests knitr
System Requirements
Enhances
URL http://www.cbg.ethz.ch/software/gespeR
See More
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary gespeR_1.33.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/gespeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gespeR
Bioc Package Browser https://code.bioconductor.org/browse/gespeR/
Package Short Url https://bioconductor.org/packages/gespeR/
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