iCNV

This is the development version of iCNV; for the stable release version, see iCNV.

Integrated Copy Number Variation detection

Bioconductor version: Development (3.18)

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Author: Zilu Zhou, Nancy Zhang

Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>

Citation (from within R, enter citation("iCNV")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iCNV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCNV")

iCNV Vignette	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	CopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome
Version	1.21.0
In Bioconductor since	BioC 3.7 (R-3.5) (5.5 years)
License	GPL-2
Depends	R (>= 3.3.1), CODEX
Imports	fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang
Linking To
Suggests	knitr, rmarkdown, WES.1KG.WUGSC
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCNV_1.21.0.tar.gz
Windows Binary	iCNV_1.21.0.zip (64-bit only)
macOS Binary (x86_64)	iCNV_1.21.0.tgz
macOS Binary (arm64)	iCNV_1.21.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCNV
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iCNV
Bioc Package Browser	https://code.bioconductor.org/browse/iCNV/
Package Short Url	https://bioconductor.org/packages/iCNV/
Package Downloads Report	Download Stats