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imageHTS

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of imageHTS; for the stable release version, see imageHTS.

Analysis of high-throughput microscopy-based screens

Bioconductor version: Development (3.18)

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("imageHTS")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("imageHTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CellBasedAssays, ImmunoOncology, Preprocessing, Software, Visualization
Version 1.51.1
In Bioconductor since BioC 2.7 (R-2.12) (13 years)
License LGPL-2.1
Depends R (>= 2.9.0), EBImage(>= 4.3.12), cellHTS2(>= 2.10.0)
Imports tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
Linking To
Suggests BiocStyle, MASS
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/imageHTS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/imageHTS
Package Short Url https://bioconductor.org/packages/imageHTS/
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