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intansv

This is the development version of intansv; for the stable release version, see intansv.

Integrative analysis of structural variations

Bioconductor version: Development (3.18)

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

Author: Wen Yao <ywhzau at gmail.com>

Maintainer: Wen Yao <ywhzau at gmail.com>

Citation (from within R, enter citation("intansv")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("intansv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("intansv")
An Introduction to intansv PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Annotation, Genetics, Sequencing, Software
Version 1.41.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License MIT + file LICENSE
Depends R (>= 2.14.0), plyr, ggbio, GenomicRanges
Imports BiocGenerics, IRanges
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package intansv_1.41.0.tar.gz
Windows Binary intansv_1.41.0.zip
macOS Binary (x86_64) intansv_1.41.0.tgz
macOS Binary (arm64) intansv_1.41.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/intansv
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/intansv
Bioc Package Browser https://code.bioconductor.org/browse/intansv/
Package Short Url https://bioconductor.org/packages/intansv/
Package Downloads Report Download Stats